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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
total RNA-seq
5
STARR-seq
3
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
10
Transcription
3
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
control
Date released
18
August, 2021
2
March, 2019
Available data
bed narrowPeak
12
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
1
vcf
Organism
20
Homo sapiens
Biosample type
16
cell line
4
tissue
Organ
13
liver
4
pancreas
2
kidney
Project
20
AMP
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
1968
AMP-T2D consortium
324
Klaus Kaestner, Upenn
193
Kyle Gaulton, UCSD
78
Katalin Susztak, Upenn
47
KPMP
20
Bing Ren, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
3
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
files.file_type!
bed narrowPeak
target.investigated_as!
narrow histone mark
control
BIOSAMPLE
ASSAY
20 results
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total RNA-seq
STARR-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
9
2
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
2
1
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