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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
total RNA-seq
5
STARR-seq
2
Hi-C
1
ATAC-seq
1
whole genome sequencing assay
Assay category
2
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Date released
8
August, 2021
1
March, 2019
Available data
2
bedpe bed3+
2
hic
bedpe
1
vcf
Organism
9
Homo sapiens
Biosample type
7
cell line
2
tissue
Organ
4
liver
2
kidney
2
pancreas
Project
9
AMP
Genome assembly (visualization)
2
hg19
1
GRCh38
Lab
1006
AMP-T2D consortium
232
Klaus Kaestner, Upenn
93
Katalin Susztak, Upenn
74
Kyle Gaulton, UCSD
47
KPMP
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
files.file_type!
bedpe
assay_title!
total RNA-seq
ChIP-seq
BIOSAMPLE
ASSAY
9 results
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STARR-seq
Hi-C
ATAC-seq
whole genome sequencing assay
cell line
HepG2
2
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
1
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