Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
164
ChIP-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
288
DNA accessibility
189
Transcription
164
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
100
May, 2020
99
May, 2021
48
July, 2018
47
February, 2021
44
June, 2019
43
April, 2018
43
September, 2020
37
August, 2017
32
September, 2018
23
October, 2019
18
July, 2019
12
February, 2023
8
January, 2021
7
August, 2020
6
November, 2017
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
August, 2021
2
November, 2020
1
March, 2020
1
March, 2023
1
November, 2018
Available data
356
bam
349
bigWig
249
fastq
191
bed narrowPeak
153
zippedFastqFolder
120
tsv
83
bigBed narrowPeak
53
tagAlign
41
bed broadPeak
41
bigBed broadPeak
33
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
726
Homo sapiens
Biosample type
1415
tissue
726
primary cell
530
cell line
203
in vitro differentiated cells
9
stem cell
Organ
278
epithelium
234
pancreas
27
vasculature
25
connective tissue
25
kidney
22
blood vessel
18
brain
16
vein
9
musculature of body
8
blood
8
bodily fluid
7
heart
7
liver
4
eye
1
adipose tissue
1
bone element
1
bone marrow
Project
425
AMP
232
HPAP
68
T1D
1
ITG
Genome assembly (visualization)
364
hg19
284
GRCh38
Lab
402
AMP-T2D consortium
232
Klaus Kaestner, Upenn
91
Kyle Gaulton, UCSD
1
ITG
Audit category:
41
inconsistent ontology term
31
audit script error
Audit category:
21
missing controlled_by
Audit category:
1
inconsistent assembly
files.file_type!
bedpe
assay_title!
total RNA-seq
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
726 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
pancreatic alpha cell
35
12
9
31
1
monocyte
15
44
1
1
pancreatic beta cell
23
12
9
16
1
CD8-positive, alpha-beta T cell
2
23
1
+ See 86 more…
See all biosamples
Download