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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
307
ChIP-seq
1
ATAC-seq
Assay category
307
DNA binding
1
DNA accessibility
Target of assay
288
transcription factor
81
recombinant protein
52
RNA binding protein
20
chromatin remodeller
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
44
November, 2018
14
August, 2021
1
February, 2021
Available data
367
fastq
366
bam
332
bigWig
308
bed narrowPeak
293
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
15
tsv
12
tagAlign
3
tar
1
bed bed3
1
bed bed3+
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
1
vcf
Organism
308
Homo sapiens
Biosample type
308
cell line
Organ
308
liver
Project
308
AMP
Genome assembly (visualization)
304
hg19
262
GRCh38
Lab
294
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bedpe
BIOSAMPLE
ASSAY
308 results
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ChIP-seq
ATAC-seq
cell line
HepG2
307
1
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