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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
978
total RNA-seq
161
single cell RNA-seq
16
small RNA-seq
Assay category
1155
Transcription
907
DNA binding
469
DNA accessibility
38
DNA methylation
15
3D chromatin structure
Date released
445
February, 2021
143
May, 2020
120
July, 2018
99
August, 2021
89
August, 2017
47
July, 2019
47
September, 2023
39
May, 2021
25
February, 2020
22
October, 2019
21
May, 2022
19
November, 2019
10
February, 2023
9
April, 2020
9
March, 2020
6
April, 2018
4
May, 2023
1
December, 2019
Available data
1050
tsv
923
bam
917
bigWig
103
fastq
txt
6
csv
Organism
1155
Homo sapiens
Biosample type
1155
tissue
436
primary cell
138
in vitro differentiated cells
115
cell line
2
stem cell
Organ
457
connective tissue
399
adipose tissue
285
pancreas
174
liver
109
heart
58
bone element
53
kidney
21
brain
19
eye
13
blood vessel
13
vasculature
9
lung
7
limb
7
musculature of body
5
nerve
4
artery
2
epithelium
1
spinal cord
Project
1092
AMP
47
KPMP
9
LungMap
7
T1D
Genome assembly (visualization)
918
GRCh38
918
hg19
Lab
1069
AMP-T2D consortium
47
KPMP
20
Karen Mohlke, UNC
9
Xin Sun, UCSD
6
Kyle Gaulton, UCSD
3
Katalin Susztak, Upenn
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
files.file_type!
bedpe
txt
BIOSAMPLE
ASSAY
1155 results
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Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
tissue
adipose tissue
382
islet of Langerhans
292
liver
167
1
1
bone tissue
58
kidney
51
heart left ventricle
3
18
heart right ventricle
1
17
left cardiac atrium
18
right cardiac atrium
18
lung
9
subcutaneous adipose tissue
7
1
heart
4
1
1
omental fat pad
5
1
aorta
1
4
body of pancreas
3
2
right lobe of liver
3
2
tibial nerve
5
aortic valve
4
pulmonary valve
4
tricuspid valve
4
cardiac atrium
1
2
cardiac ventricle
1
2
frontal cortex
2
1
mitral valve
3
retina
3
right atrium auricular region
3
skeletal muscle tissue
1
1
1
visceral abdominal adipose tissue
3
ascending aorta
2
cerebellum
2
cerebellum (Hemisphere)
1
1
diencephalon
1
1
interventricular septum
2
metanephros
1
1
occipital lobe
1
1
pancreas
2
parietal lobe
1
1
pigmented layer of retina
2
psoas muscle
2
pulmonary artery
2
temporal lobe
1
1
thoracic aorta
2
Ammon's horn
1
C1 segment of cervical spinal cord
1
amygdala
1
anterior cingulate cortex
1
brain
1
caudate nucleus
1
coronary artery
1
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
1
gastrocnemius medialis
1
hypothalamus
1
left ventricle myocardium
1
nucleus accumbens
1
putamen
1
substantia nigra
1
tibial artery
1
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