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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
ChIP-seq
89
total RNA-seq
9
WGBS
5
RRBS
2
ATAC-seq
2
DNase-seq
1
FAIRE-seq
Assay category
174
DNA binding
89
Transcription
14
DNA methylation
5
DNA accessibility
Target of assay
124
histone modification
123
histone
73
broad histone mark
50
narrow histone mark
29
control
23
transcription factor
RNA binding protein
Date released
545
February, 2021
282
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
111
May, 2019
95
February, 2023
82
November, 2017
77
July, 2019
76
April, 2019
66
May, 2022
63
October, 2018
47
September, 2023
46
December, 2017
40
March, 2020
40
May, 2021
40
November, 2019
35
May, 2024
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
4
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
176
bigWig
173
fastq
168
bam
89
tsv
65
bed narrowPeak
59
tagAlign
26
bed broadPeak
24
bed bed3+
22
bigBed narrowPeak
5
bed bedMethyl
5
bigBed bedMethyl
Organism
275
Homo sapiens
Biosample type
282
tissue
64
in vitro differentiated cells
57
primary cell
Organ
145
pancreas
57
adipose tissue
57
connective tissue
54
liver
26
musculature of body
Project
282
AMP
Genome assembly (visualization)
178
hg19
156
GRCh38
Lab
282
AMP-T2D consortium
Audit category:
21
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
files.file_type!
bedpe
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
282 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
40
89
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
white adipose tissue
12
adipose tissue
2
3
right lobe of liver
1
1
subcutaneous adipose tissue
1
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