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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
DNase-seq
97
ChIP-seq
2
ATAC-seq
Assay category
175
DNA accessibility
97
DNA binding
Target of assay
51
histone
51
histone modification
46
transcription factor
30
broad histone mark
21
narrow histone mark
6
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
157
June, 2019
58
November, 2017
38
August, 2017
9
October, 2019
7
November, 2018
1
March, 2019
1
November, 2020
1
October, 2017
Available data
2855
bam
2684
bigWig
1479
bed narrowPeak
1443
tsv
1193
fastq
895
bigBed narrowPeak
272
bed broadPeak
245
bigBed broadPeak
238
tagAlign
212
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
6
bed bed3
4
tar
3
cool
bedpe
1
hdf5
1
vcf
Organism
267
Homo sapiens
Biosample type
176
tissue
59
cell line
37
primary cell
in vitro differentiated cells
Organ
78
kidney
63
liver
brain
46
musculature of body
36
limb
30
heart
22
epithelium
20
pancreas
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
272
AMP
Genome assembly (visualization)
258
hg19
233
GRCh38
Lab
270
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
inconsistent assembly
files.file_type!
bedpe
audit.WARNING.category!
inconsistent assembly
biosample_type!
in vitro differentiated cells
organ_slims!
brain
BIOSAMPLE
ASSAY
272 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
skeletal muscle tissue
13
+ See 29 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
12
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 13 more…
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