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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ChIP-seq
2
ATAC-seq
2
DNase-seq
Assay category
57
DNA binding
4
DNA accessibility
Target of assay
49
transcription factor
9
RNA binding protein
8
histone
8
histone modification
5
chromatin remodeller
4
broad histone mark
4
narrow histone mark
1
other context
1
other post-translational modification
Date released
53
November, 2017
4
August, 2017
2
October, 2019
1
March, 2019
1
October, 2017
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
tagAlign
322
bed broadPeak
285
bigBed broadPeak
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
bedpe
1
tagAlign bed3+
1
vcf
Organism
61
Homo sapiens
Biosample type
47
cell line
11
primary cell
2
tissue
1
in vitro differentiated cells
Organ
47
liver
6
brain
6
epithelium
6
vasculature
4
blood vessel
2
pancreas
2
vein
1
connective tissue
Project
61
AMP
Genome assembly (visualization)
60
hg19
44
GRCh38
Lab
59
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
inconsistent control read length
files.file_type!
bedpe
bed bed3+
tagAlign
BIOSAMPLE
ASSAY
61 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
47
primary cell
skeletal muscle myoblast
2
1
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
tissue
islet of Langerhans
2
in vitro differentiated cells
adipocyte
1
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