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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
52
single cell RNA-seq
41
ATAC-seq
41
WGBS
21
snATAC-seq
2
DNase-seq
Assay category
114
DNA binding
64
DNA accessibility
52
Transcription
41
DNA methylation
Target of assay
65
histone
65
histone modification
49
transcription factor
36
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
134
May, 2022
70
November, 2017
41
August, 2017
19
September, 2020
4
October, 2017
2
October, 2019
1
March, 2019
Available data
3392
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
bedpe
1
tagAlign bed3+
1
vcf
Organism
265
Homo sapiens
Biosample type
175
primary cell
58
cell line
37
tissue
1
in vitro differentiated cells
Organ
94
pancreas
86
epithelium
58
liver
15
brain
13
musculature of body
6
vasculature
4
blood vessel
2
connective tissue
2
vein
1
adipose tissue
Project
153
HPAP
118
AMP
Genome assembly (visualization)
117
hg19
78
GRCh38
Lab
153
Klaus Kaestner, Upenn
116
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
files.file_type!
bedpe
bed bed3+
BIOSAMPLE
ASSAY
271 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
DNase-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
skeletal muscle myoblast
13
1
pancreatic acinar cell
4
+ See 4 more…
cell line
HepG2
58
tissue
skeletal muscle tissue
13
islet of Langerhans
6
2
pancreas
6
brain
3
cingulate gyrus
2
+ See 4 more…
in vitro differentiated cells
adipocyte
1
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