Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ATAC-seq
66
ChIP-seq
Assay category
151
DNA accessibility
66
DNA binding
Target of assay
55
histone
55
histone modification
33
broad histone mark
22
narrow histone mark
11
transcription factor
1
RNA binding protein
Date released
80
August, 2021
65
February, 2023
30
May, 2021
20
August, 2017
20
May, 2022
1
April, 2019
1
November, 2017
Available data
bam
3129
bigWig
1777
bed narrowPeak
1600
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
bedpe
1
tagAlign bed3+
1
vcf
Organism
217
Homo sapiens
Biosample type
169
tissue
30
primary cell
14
cell line
4
in vitro differentiated cells
Organ
64
kidney
36
heart
35
artery
35
blood vessel
35
vasculature
34
liver
27
eye
13
musculature of body
12
epithelium
6
pancreas
4
connective tissue
2
adipose tissue
1
brain
Project
217
AMP
Genome assembly (visualization)
118
hg19
99
GRCh38
Lab
85
AMP-T2D consortium
64
Katalin Susztak, Upenn
30
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
1
inconsistent ontology term
files.file_type!
bedpe
bam
BIOSAMPLE
ASSAY
217 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
tissue
kidney
64
coronary artery
35
liver
20
retina
15
skeletal muscle tissue
13
+ See 6 more…
primary cell
CD8-positive, alpha-beta T cell
30
cell line
HepG2
14
in vitro differentiated cells
adipocyte
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
See all biosamples
Download