Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
152
single cell RNA-seq
47
WGBS
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
442
Transcription
270
DNA accessibility
212
DNA binding
47
DNA methylation
7
3D chromatin structure
1
DNA sequencing
Date released
100
May, 2022
81
February, 2023
67
August, 2021
59
May, 2021
56
September, 2020
47
September, 2023
45
May, 2020
18
February, 2021
9
April, 2020
4
March, 2023
3
May, 2023
Available data
138
fastq
112
tsv
102
bam
98
bigWig
93
zippedFastqFolder
63
txt
2
bed bed3+
Organism
485
Homo sapiens
Biosample type
322
primary cell
149
tissue
11
cell line
5
in vitro differentiated cells
2
stem cell
Organ
113
pancreas
107
kidney
100
epithelium
29
liver
9
lung
Project
224
HPAP
104
AMP
101
T1D
47
KPMP
9
LungMap
4
community
Genome assembly (visualization)
98
hg19
96
GRCh38
Lab
AMP-T2D consortium
224
Klaus Kaestner, Upenn
115
Kyle Gaulton, UCSD
60
Katalin Susztak, Upenn
47
KPMP
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
Audit category:
4
inconsistent ontology term
files.file_type!
bedpe
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
489 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
WGBS
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
pancreatic alpha cell
42
31
monocyte
53
exocrine cell
39
pancreatic beta cell
11
16
+ See 24 more…
tissue
kidney
49
58
liver
20
islet of Langerhans
12
lung
9
pancreas
1
cell line
HepG2
9
EndoC-BH1
1
1
in vitro differentiated cells
embryonic stem cell
5
stem cell
SB Ad3.1
1
1
See all biosamples
Download