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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
234
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
pCHi-C
6
Hi-C
1
DNAme array
1
FAIRE-seq
1
RRBS
Assay category
418
Transcription
288
DNA accessibility
279
DNA binding
49
DNA methylation
6
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
190
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
July, 2018
47
February, 2021
43
April, 2018
34
October, 2019
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
591
bigWig
590
bam
409
fastq
295
bed narrowPeak
252
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
32
bed bed3+
6
hic
4
bedpe bed3+
3
cool
2
csv
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
1040
Homo sapiens
Biosample type
2674
tissue
1040
primary cell
656
cell line
389
in vitro differentiated cells
6
stem cell
Organ
393
epithelium
346
pancreas
32
vasculature
29
connective tissue
29
kidney
27
blood vessel
22
vein
14
brain
12
liver
11
musculature of body
8
blood
8
bodily fluid
8
heart
4
eye
Project
527
AMP
324
HPAP
188
T1D
1
ITG
Genome assembly (visualization)
596
hg19
518
GRCh38
Lab
492
AMP-T2D consortium
324
Klaus Kaestner, Upenn
223
Kyle Gaulton, UCSD
1
ITG
Audit category:
51
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bedpe
month_released!
July, 2019
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
1040 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
DNAme array
FAIRE-seq
RRBS
primary cell
monocyte
85
54
15
1
pancreatic alpha cell
13
52
35
12
31
1
Langerhans cell
85
48
pancreatic beta cell
13
21
23
12
16
1
CD8-positive, alpha-beta T cell
33
4
2
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