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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
70
ChIP-seq
8
WGBS
7
ATAC-seq
3
DNase-seq
3
pCHi-C
3
small RNA-seq
1
RNA microarray
Assay category
401
Transcription
70
DNA binding
10
DNA accessibility
8
DNA methylation
Target of assay
38
histone
38
histone modification
24
broad histone mark
18
transcription factor
14
control
14
narrow histone mark
3
other context
3
other post-translational modification
Date released
386
February, 2021
57
August, 2017
October, 2018
12
July, 2019
10
November, 2018
7
December, 2018
7
January, 2019
2
February, 2020
2
March, 2020
2
October, 2017
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2019
1
October, 2019
Available data
443
bam
436
bigWig
402
tsv
45
fastq
22
bed narrowPeak
18
bigBed narrowPeak
8
tagAlign
7
bed bed3+
4
bed bedMethyl
4
bed broadPeak
4
bigBed bedMethyl
3
bigBed broadPeak
1
bedpe bed3+
Organism
492
Homo sapiens
Biosample type
490
tissue
2
primary cell
1
in vitro differentiated cells
Organ
892
pancreas
791
liver
661
connective tissue
522
epithelium
468
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
493
AMP
Genome assembly (visualization)
435
GRCh38
435
hg19
Lab
493
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bedpe
month_released!
October, 2018
BIOSAMPLE
ASSAY
493 results
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total RNA-seq
ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
spleen
20
2
1
1
1
white adipose tissue
12
subcutaneous adipose tissue
7
1
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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