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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
8
DNase-seq
3
ATAC-seq
1
FAIRE-seq
Assay category
94
DNA binding
12
DNA accessibility
Target of assay
64
histone
64
histone modification
43
broad histone mark
28
transcription factor
21
narrow histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
312
November, 2017
210
June, 2019
97
May, 2019
73
November, 2018
70
October, 2019
64
April, 2019
50
December, 2017
45
October, 2018
42
August, 2017
30
December, 2018
21
January, 2019
14
September, 2018
6
October, 2017
5
September, 2017
2
July, 2019
1
November, 2020
Available data
299
bam
251
bigWig
231
bed narrowPeak
106
bigBed narrowPeak
63
tagAlign
52
fastq
16
tsv
13
bed broadPeak
9
bigBed broadPeak
8
bed bed3+
4
hic
3
bedpe bed3+
1
hdf5
1
tagAlign bed3+
1
tar
Organism
106
Homo sapiens
Biosample type
56
tissue
35
cell line
13
primary cell
2
in vitro differentiated cells
Organ
46
limb
33
blood vessel
33
vasculature
27
blood
27
bodily fluid
26
nerve
20
artery
14
epithelium
13
vein
7
pancreas
6
brain
3
connective tissue
3
spleen
1
adipose tissue
1
kidney
Project
106
AMP
Genome assembly (visualization)
106
hg19
102
GRCh38
Lab
106
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
3
missing controlled_by
files.file_type!
bedpe
BIOSAMPLE
ASSAY
106 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
tibial nerve
24
2
tibial artery
18
2
brain
6
spleen
3
adipose tissue
1
cell line
GM12878
27
Panc1
6
1
glomerular visceral epithelial cell
1
primary cell
endothelial cell of umbilical vein
10
2
1
in vitro differentiated cells
adipocyte
2
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