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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
880
ChIP-seq
Assay category
1112
Transcription
880
DNA binding
320
DNA accessibility
37
DNA methylation
14
3D chromatin structure
Target of assay
608
histone modification
607
histone
314
narrow histone mark
293
broad histone mark
179
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
191
October, 2019
176
August, 2017
115
May, 2019
82
November, 2017
74
October, 2018
57
April, 2019
50
May, 2020
48
December, 2017
40
May, 2024
15
October, 2017
10
November, 2018
7
December, 2018
7
January, 2019
6
September, 2017
2
March, 2020
Available data
695
bam
595
bigWig
575
bed narrowPeak
359
bigBed narrowPeak
238
tagAlign
220
fastq
35
bed broadPeak
28
bed bed3+
1
tagAlign bed3+
Organism
873
Homo sapiens
Biosample type
880
tissue
474
cell line
264
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
209
brain
155
liver
123
heart
117
pancreas
74
connective tissue
73
adipose tissue
73
blood vessel
73
vasculature
66
limb
35
nerve
29
musculature of body
28
artery
kidney
20
spleen
4
gonad
4
ovary
2
eye
1
lymph node
1
pituitary gland
Project
878
AMP
2
T1D
Genome assembly (visualization)
570
GRCh38
509
hg19
Lab
840
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
27
inconsistent control
2
inconsistent ontology term
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bedpe
organ_slims!
kidney
BIOSAMPLE
ASSAY
880 results
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Clear Filters
ChIP-seq
tissue
liver
145
islet of Langerhans
71
left cardiac atrium
40
subcutaneous abdominal adipose tissue
36
body of pancreas
35
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