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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
924
total RNA-seq
104
single cell RNA-seq
20
pCHi-C
15
small RNA-seq
1
ATAC-seq
Assay category
1043
Transcription
1
DNA accessibility
Date released
444
February, 2021
143
May, 2020
116
July, 2018
99
August, 2021
89
August, 2017
45
July, 2019
38
May, 2021
28
March, 2020
25
February, 2020
19
November, 2019
8
October, 2019
6
April, 2018
4
February, 2023
Available data
1809
bam
1681
bigWig
1064
tsv
831
bed narrowPeak
474
bigBed narrowPeak
377
fastq
238
tagAlign
145
bed broadPeak
137
bed bed3+
108
bigBed broadPeak
95
txt
24
bed bedMethyl
24
bigBed bedMethyl
10
bedpe bed3+
10
hic
5
bed bed3
bedpe
1
csv
1
tagAlign bed3+
Organism
1064
Homo sapiens
Biosample type
1064
tissue
264
primary cell
131
in vitro differentiated cells
113
cell line
4
stem cell
Organ
457
connective tissue
399
adipose tissue
275
pancreas
154
liver
111
heart
58
bone element
23
brain
14
blood vessel
14
vasculature
kidney
7
limb
7
musculature of body
5
eye
5
nerve
4
artery
3
epithelium
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
1064
AMP
Genome assembly (visualization)
916
hg19
915
GRCh38
Lab
1063
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
files.file_type!
bedpe
organ_slims!
kidney
BIOSAMPLE
ASSAY
1064 results
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total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
ATAC-seq
tissue
adipose tissue
381
1
islet of Langerhans
261
6
1
liver
147
1
1
bone tissue
58
heart left ventricle
3
18
1
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