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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1666
ChIP-seq
993
total RNA-seq
431
ATAC-seq
301
single cell RNA-seq
122
DNase-seq
84
RNA microarray
78
snATAC-seq
69
WGBS
50
pCHi-C
31
Hi-C
16
RRBS
14
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
122
DNA accessibility
Date released
103
June, 2019
8
November, 2018
7
October, 2019
4
August, 2017
Available data
121
bam
121
bed narrowPeak
121
bigBed narrowPeak
121
bigWig
119
bed broadPeak
119
bigBed broadPeak
118
bed bed3+
10
fastq
Organism
122
Homo sapiens
Biosample type
108
tissue
13
primary cell
1
cell line
Organ
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
122
AMP
Genome assembly (visualization)
119
GRCh38
106
hg19
Lab
122
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
bedpe
organ_slims!
kidney
connective tissue
BIOSAMPLE
ASSAY
122 results
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Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
muscle of leg
13
body of pancreas
4
+ See 30 more…
primary cell
endothelial cell of umbilical vein
2
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
+ See 6 more…
cell line
Panc1
1
See all biosamples
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