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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
Assay category
19
DNA binding
Target of assay
19
histone
19
histone modification
10
narrow histone mark
10
transcription factor
9
broad histone mark
2
chromatin remodeller
Date released
9
August, 2017
7
December, 2017
2
February, 2018
1
October, 2018
Available data
19
bam
19
bed narrowPeak
19
bigWig
19
fastq
6
bed bed3+
6
bigBed narrowPeak
Organism
19
Homo sapiens
Biosample type
7
in vitro differentiated cells
5
primary cell
5
tissue
2
stem cell
Organ
liver
9
pancreas
5
epithelium
2
embryo
Project
19
AMP
Genome assembly (visualization)
19
GRCh38
19
hg19
Lab
19
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
19
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bedpe
organ_slims!
liver
BIOSAMPLE
ASSAY
19 results
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ChIP-seq
in vitro differentiated cells
definitive endodermal cell
3
Hepatic endoderm
1
Posterior foregut
1
pancreatic endoderm
1
primitive gut cell
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
tissue
pancreas
4
body of pancreas
1
stem cell
hESC
2
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