Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
114
ChIP-seq
100
ATAC-seq
8
DNase-seq
5
WGBS
1
FAIRE-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
191
Transcription
114
DNA binding
109
DNA accessibility
5
DNA methylation
Target of assay
61
transcription factor
27
histone
27
histone modification
27
narrow histone mark
26
control
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
63
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
28
December, 2018
25
February, 2020
23
January, 2019
22
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2023
4
August, 2018
4
March, 2019
4
October, 2022
3
June, 2018
1
August, 2022
Available data
361
bam
334
bigWig
189
tsv
96
bed narrowPeak
79
fastq
69
bigBed narrowPeak
50
tagAlign
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
5
bed bedMethyl
5
bigBed bedMethyl
1
csv
Organism
420
Homo sapiens
Biosample type
210
tissue
148
primary cell
62
cell line
Organ
247
liver
15
blood
15
bodily fluid
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
375
AMP
45
T1D
Genome assembly (visualization)
327
hg19
280
GRCh38
Lab
375
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bedpe
organ_slims!
spleen
BIOSAMPLE
ASSAY
420 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
pCHi-C
single cell RNA-seq
tissue
liver
143
54
2
body of pancreas
2
2
pancreas
2
1
brain
2
omental fat pad
1
+ See 1 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 25 more…
cell line
HepG2
45
1
1
GM12878
15
See all biosamples
Download