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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
RNA microarray
78
ChIP-seq
28
ATAC-seq
11
total RNA-seq
6
pCHi-C
4
WGBS
2
Capture-C
1
RRBS
Assay category
78
DNA binding
28
DNA accessibility
11
Transcription
5
DNA methylation
Target of assay
43
histone
43
histone modification
35
control
28
broad histone mark
15
narrow histone mark
Date released
97
February, 2021
60
August, 2017
22
February, 2023
18
October, 2018
3
August, 2021
3
June, 2019
2
February, 2020
2
March, 2020
2
May, 2021
1
August, 2018
1
July, 2019
1
May, 2023
1
November, 2019
1
November, 2020
1
October, 2019
Available data
601
bam
bigWig
478
tsv
101
fastq
88
txt
83
bed narrowPeak
28
bigBed narrowPeak
27
bed bed3+
22
tagAlign
10
bed bed3
10
bed broadPeak
9
bigBed broadPeak
4
bed bedgraph
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
Organism
214
Homo sapiens
Biosample type
166
tissue
40
in vitro differentiated cells
8
primary cell
1
stem cell
Organ
322
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
213
AMP
2
T1D
Genome assembly (visualization)
34
hg19
12
GRCh38
Lab
211
AMP-T2D consortium
2
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
93
inconsistent ontology term
files.file_type!
bedpe
bigWig
BIOSAMPLE
ASSAY
215 results
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RNA microarray
ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
WGBS
Capture-C
RRBS
tissue
bone element
84
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
1
10
1
omental fat pad
8
1
adipose tissue
1
1
1
1
1
+ See 14 more…
in vitro differentiated cells
adipocyte
20
5
1
1
chondrocyte
5
immature adipocyte
2
2
preadipocyte
1
1
osteoblast
1
+ See 1 more…
primary cell
cardiac fibroblast
2
1
osteoblast
1
1
adult endothelial progenitor cell
1
megakaryocyte
1
mesenchymal stem cell
1
stem cell
mesenchymal stem cell
1
See all biosamples
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