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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
2
Capture-C
Assay category
19
DNA binding
DNA accessibility
Target of assay
8
histone
8
histone modification
6
transcription factor
5
control
4
broad histone mark
4
narrow histone mark
Date released
12
December, 2017
7
August, 2017
2
August, 2021
Available data
273
bam
246
bigWig
140
fastq
131
tsv
110
bed narrowPeak
40
tagAlign
21
bed bed3+
14
bigBed narrowPeak
bedpe bed3+
4
hic
2
ibed
Organism
21
Homo sapiens
Biosample type
28
tissue
21
in vitro differentiated cells
10
primary cell
3
stem cell
2
cell line
Organ
9
connective tissue
3
embryo
Project
21
AMP
Genome assembly (visualization)
21
hg19
19
GRCh38
Lab
19
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
8
inconsistent control read length
files.file_type!
bedpe bed3+
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
Capture-C
in vitro differentiated cells
adipocyte
7
1
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
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