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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
ChIP-seq
127
total RNA-seq
4
GRO-seq
2
pCHi-C
2
single cell RNA-seq
Assay category
131
DNA binding
129
Transcription
DNA accessibility
Target of assay
75
histone
75
histone modification
39
narrow histone mark
36
broad histone mark
29
control
27
transcription factor
7
RNA binding protein
1
chromatin remodeller
Date released
126
May, 2021
43
December, 2017
39
February, 2018
28
August, 2021
18
February, 2021
4
January, 2018
4
March, 2020
2
December, 2019
2
October, 2019
Available data
215
bam
194
bigWig
126
tsv
86
fastq
68
bed narrowPeak
26
tagAlign
14
bigBed narrowPeak
12
bed bed3+
bedpe bed3+
4
hic
2
ibed
Organism
266
Homo sapiens
Biosample type
1758
tissue
765
primary cell
629
cell line
266
in vitro differentiated cells
9
stem cell
Organ
connective tissue
29
embryo
24
epithelium
15
liver
3
pancreas
1
heart
Project
266
AMP
Genome assembly (visualization)
194
GRCh38
193
hg19
4
hg18
Lab
224
AMP-T2D consortium
42
Kyle Gaulton, UCSD
Audit category:
97
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
files.file_type!
bedpe bed3+
assay_slims!
DNA accessibility
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
266 results
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ChIP-seq
total RNA-seq
GRO-seq
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
3
59
embryonic stem cell
40
7
1
neural progenitor cell
21
7
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
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