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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
total RNA-seq
80
ChIP-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
115
Transcription
80
DNA binding
DNA accessibility
Target of assay
134
histone
134
histone modification
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
156
May, 2021
45
May, 2020
10
February, 2023
6
May, 2022
Available data
151
bigWig
142
bam
96
tsv
50
bed narrowPeak
40
tagAlign
6
fastq
6
txt
2
bed bed3+
Organism
217
Homo sapiens
Biosample type
167
primary cell
32
in vitro differentiated cells
13
tissue
5
cell line
Organ
12
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
163
T1D
54
AMP
Genome assembly (visualization)
151
hg19
136
GRCh38
Lab
2926
AMP-T2D consortium
224
Klaus Kaestner, Upenn
217
Kyle Gaulton, UCSD
61
Katalin Susztak, Upenn
47
KPMP
34
Bing Ren, UCSD
20
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
2
Struan F.A. Grant, CHOP
1
ITG
Audit category:
5
inconsistent ontology term
files.file_type!
bedpe bed3+
assay_slims!
DNA accessibility
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
217 results
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total RNA-seq
ChIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
40
1
CD8-positive, alpha-beta T cell
4
13
1
B cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
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in vitro differentiated cells
embryonic stem cell
5
27
tissue
islet of Langerhans
11
pancreas
1
thymus
1
cell line
EndoC_BH1
3
2
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