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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
504
ATAC-seq
84
snATAC-seq
3
DNase-seq
Assay category
1918
Transcription
1030
DNA binding
591
DNA accessibility
97
DNA methylation
14
3D chromatin structure
1
DNA sequencing
Date released
105
February, 2023
100
May, 2020
99
May, 2022
82
August, 2021
49
February, 2021
34
May, 2021
26
November, 2019
21
October, 2019
16
January, 2021
11
May, 2023
10
April, 2020
8
October, 2017
7
August, 2020
6
July, 2019
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
1
August, 2017
1
August, 2022
1
November, 2020
Available data
492
bed narrowPeak
389
bam
350
bigWig
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
102
fastq
64
xls
60
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
4
txt
1
tar
Organism
590
Homo sapiens
Biosample type
286
tissue
236
primary cell
40
in vitro differentiated cells
29
cell line
Organ
141
pancreas
83
epithelium
83
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
23
liver
21
connective tissue
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
limb
4
adipose tissue
4
brain
2
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
455
AMP
97
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
235
hg19
210
GRCh38
Lab
321
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
42
inconsistent ontology term
29
audit script error
1
inconsistent replicate
files.file_type!
bedpe bed3+
bigBed narrowPeak
BIOSAMPLE
ASSAY
591 results
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Clear Filters
ATAC-seq
snATAC-seq
DNase-seq
tissue
kidney
75
6
islet of Langerhans
68
7
coronary artery
36
liver
20
retina
15
+ See 30 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
29
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic beta cell
16
+ See 37 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
6
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
See all biosamples
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