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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1029
total RNA-seq
879
ChIP-seq
223
ATAC-seq
178
single cell RNA-seq
174
DNase-seq
87
RNA microarray
snATAC-seq
27
WGBS
25
pCHi-C
16
small RNA-seq
11
RRBS
6
Hi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1223
Transcription
879
DNA binding
401
DNA accessibility
38
DNA methylation
6
3D chromatin structure
Target of assay
608
histone modification
607
histone
318
narrow histone mark
289
broad histone mark
180
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
220
August, 2021
215
October, 2019
193
May, 2020
161
June, 2019
120
July, 2018
110
May, 2019
82
November, 2017
80
April, 2019
76
July, 2019
74
October, 2018
65
May, 2022
58
February, 2023
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
33
March, 2020
26
November, 2018
23
February, 2020
23
October, 2017
15
May, 2023
9
April, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
Available data
1873
bam
1745
bigWig
1072
tsv
922
bed narrowPeak
536
bigBed narrowPeak
377
fastq
238
tagAlign
209
bed broadPeak
200
bed bed3+
172
bigBed broadPeak
156
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2658
Homo sapiens
Biosample type
2666
tissue
1026
primary cell
594
cell line
387
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
491
pancreas
488
adipose tissue
360
liver
310
heart
293
kidney
265
brain
158
bone element
132
blood vessel
132
vasculature
122
limb
79
musculature of body
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
15
epithelium
10
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2589
AMP
47
KPMP
21
T1D
9
LungMap
Genome assembly (visualization)
1797
GRCh38
1718
hg19
Lab
2341
AMP-T2D consortium
136
Katalin Susztak, Upenn
47
KPMP
42
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
9
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
7
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bedpe bed3+
assay_title!
snATAC-seq
organ_slims!
artery
BIOSAMPLE
ASSAY
2666 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
small RNA-seq
RRBS
Hi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
71
68
6
1
4
1
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
1
2
3
1
1
1
kidney
49
27
75
64
13
1
1
1
bone element
84
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