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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
25
ATAC-seq
9
total RNA-seq
4
GRO-seq
2
Capture-C
pCHi-C
2
single cell RNA-seq
Assay category
78
DNA binding
25
DNA accessibility
11
Transcription
Target of assay
34
histone
34
histone modification
32
control
19
broad histone mark
15
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
48
May, 2021
19
August, 2017
16
February, 2023
12
August, 2021
8
February, 2018
5
December, 2017
4
February, 2021
4
January, 2018
2
December, 2019
2
October, 2019
Available data
26
bam
22
fastq
22
tagAlign
16
bigWig
7
bed bedgraph
6
bed bed3+
5
bed bed3
4
bed narrowPeak
bedpe bed3+
4
hic
3
txt
2
bigBed narrowPeak
2
tsv
Organism
120
Homo sapiens
Biosample type
883
tissue
531
primary cell
190
cell line
120
in vitro differentiated cells
3
stem cell
Organ
42
connective tissue
8
embryo
4
epithelium
1
liver
1
pancreas
Project
120
AMP
Genome assembly (visualization)
291
hg19
GRCh38
4
hg18
Lab
66
AMP-T2D consortium
47
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
9
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bedpe bed3+
assembly!
GRCh38
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
120 results
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ChIP-seq
ATAC-seq
total RNA-seq
GRO-seq
Capture-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
38
6
5
adipocyte
19
8
1
1
neural progenitor cell
8
pancreatic endoderm
5
1
chondrocyte
5
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