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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
total RNA-seq
3
Hi-C
2
ATAC-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
47
DNA binding
3
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
28
control
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
Date released
28
November, 2017
9
October, 2017
8
October, 2019
6
July, 2019
3
May, 2019
2
March, 2020
1
February, 2023
Available data
36
tagAlign
28
bam
8
bigWig
6
fastq
3
bed bed3+
3
hdf5
2
bed bedMethyl
2
bed narrowPeak
2
bigBed bedMethyl
2
tsv
1
bed bed3
1
bed broadPeak
1
bigBed narrowPeak
Organism
57
Homo sapiens
Biosample type
50
tissue
7
primary cell
Organ
231
pancreas
228
liver
170
epithelium
121
heart
111
connective tissue
100
kidney
89
bone element
64
adipose tissue
57
brain
40
vasculature
39
musculature of body
38
blood vessel
36
eye
23
limb
20
lung
15
blood
15
bodily fluid
11
artery
11
nerve
9
spleen
9
vein
8
embryo
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
57
AMP
Genome assembly (visualization)
GRCh38
159
hg19
Lab
57
AMP-T2D consortium
Audit category:
1
missing controlled_by
files.file_type!
bedpe bed3+
assembly!
GRCh38
month_released!
September, 2020
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
57 results
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ChIP-seq
Hi-C
ATAC-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
caudate nucleus
3
+ See 14 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
See all biosamples
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