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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
1
FAIRE-seq
1
WGBS
1
pCHi-C
Assay category
26
DNA binding
9
Transcription
3
3D chromatin structure
1
DNA accessibility
1
DNA methylation
Target of assay
21
control
5
histone
5
histone modification
4
broad histone mark
1
narrow histone mark
Date released
14
October, 2019
11
May, 2019
6
August, 2021
3
February, 2020
3
July, 2019
2
February, 2021
1
March, 2020
1
November, 2017
Available data
28
bam
10
tsv
6
bigWig
3
hic
2
bed bed3+
2
bed broadPeak
bedpe bed3+
2
bigBed broadPeak
2
hdf5
2
tagAlign
1
bed narrowPeak
1
bigBed narrowPeak
1
fastq
1
tar
Organism
41
Homo sapiens
Biosample type
27
tissue
12
primary cell
2
cell line
Organ
304
pancreas
258
liver
225
epithelium
149
kidney
124
heart
117
connective tissue
93
bone element
69
brain
66
adipose tissue
55
eye
43
vasculature
41
blood vessel
41
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
9
spleen
9
vein
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
41
AMP
Genome assembly (visualization)
GRCh38
157
hg19
Lab
41
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bedpe bed3+
assembly!
GRCh38
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
FAIRE-seq
WGBS
pCHi-C
tissue
aorta
2
4
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
coronary artery
2
1
+ See 1 more…
primary cell
endothelial cell of umbilical vein
7
1
1
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
cell line
smooth muscle cell of the coronary artery
2
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