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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
total RNA-seq
74
single cell RNA-seq
71
ATAC-seq
70
ChIP-seq
47
WGBS
Assay category
155
Transcription
71
DNA accessibility
70
DNA binding
47
DNA methylation
Target of assay
58
histone
58
histone modification
31
narrow histone mark
27
broad histone mark
12
control
Date released
80
May, 2022
72
September, 2018
41
August, 2017
37
February, 2023
37
July, 2018
33
April, 2018
19
September, 2020
7
August, 2020
6
February, 2021
5
September, 2017
3
August, 2018
2
October, 2018
1
June, 2018
Available data
258
fastq
194
bam
192
bigWig
108
tsv
80
zippedFastqFolder
68
bed narrowPeak
22
bigBed narrowPeak
bedpe bed3+
3
cool
3
hic
Organism
343
Homo sapiens
Biosample type
502
tissue
343
primary cell
91
cell line
3
in vitro differentiated cells
Organ
402
epithelium
343
pancreas
39
connective tissue
36
kidney
36
vasculature
30
blood vessel
21
brain
21
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
194
AMP
149
HPAP
Genome assembly (visualization)
192
GRCh38
182
hg19
Lab
194
AMP-T2D consortium
149
Klaus Kaestner, Upenn
Audit category:
5
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
343 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
WGBS
primary cell
pancreatic alpha cell
52
12
35
13
31
pancreatic beta cell
21
12
23
13
16
pancreatic acinar cell
4
12
9
8
pancreatic ductal cell
4
10
4
13
pancreatic endocrine cell
23
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