Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
897
ChIP-seq
260
ATAC-seq
169
DNase-seq
165
single cell RNA-seq
87
RNA microarray
25
pCHi-C
21
WGBS
18
snATAC-seq
16
small RNA-seq
11
RRBS
6
Hi-C
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1218
Transcription
897
DNA binding
450
DNA accessibility
32
DNA methylation
6
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
184
control
87
transcription factor
28
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
284
August, 2017
241
October, 2019
228
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
39
November, 2019
33
March, 2020
November, 2018
25
February, 2020
23
October, 2017
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1881
bam
1749
bigWig
1076
tsv
967
bed narrowPeak
544
bigBed narrowPeak
351
fastq
238
tagAlign
204
bed broadPeak
196
bed bed3+
167
bigBed broadPeak
157
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
11
hic
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2714
Homo sapiens
Biosample type
2722
tissue
1083
primary cell
599
cell line
387
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
495
pancreas
487
adipose tissue
353
liver
310
heart
299
kidney
263
brain
158
bone element
132
blood vessel
132
vasculature
122
limb
80
musculature of body
73
artery
56
eye
43
nerve
18
ureter
16
skeleton
16
spleen
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2644
AMP
47
KPMP
31
T1D
LungMap
Genome assembly (visualization)
1837
GRCh38
1729
hg19
Lab
2390
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bedpe bed3+
award.project!
LungMap
month_released!
November, 2018
BIOSAMPLE
ASSAY
2722 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
pCHi-C
WGBS
snATAC-seq
small RNA-seq
RRBS
Hi-C
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
298
71
68
1
4
7
1
1
4
1
adipose tissue
382
2
3
1
3
liver
167
141
20
1
1
3
1
1
kidney
49
27
75
13
64
6
1
1
1
bone element
84
+ See 176 more…
See all biosamples
Download