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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
474
ChIP-seq
28
ATAC-seq
6
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
Capture-C
2
Hi-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
MPRA
1
WGBS
1
pCHi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
474
DNA binding
29
DNA accessibility
2
3D chromatin structure
2
Transcription
1
DNA methylation
1
DNA sequencing
Target of assay
354
transcription factor
82
recombinant protein
80
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
315
November, 2017
61
November, 2018
28
December, 2018
24
August, 2021
18
February, 2021
18
January, 2019
17
May, 2021
15
October, 2019
14
November, 2019
6
February, 2023
6
November, 2020
2
March, 2020
2
March, 2023
1
January, 2018
1
October, 2022
Available data
567
bam
510
bigWig
427
fastq
396
bed narrowPeak
354
bigBed narrowPeak
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
524
Homo sapiens
Biosample type
1404
tissue
784
primary cell
528
cell line
256
in vitro differentiated cells
6
stem cell
Organ
385
liver
61
blood
61
bodily fluid
57
pancreas
43
epithelium
14
artery
14
blood vessel
14
heart
14
vasculature
kidney
Project
519
AMP
7
T1D
2
community
Genome assembly (visualization)
415
hg19
352
GRCh38
Lab
493
AMP-T2D consortium
22
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
5
Kyle Gaulton, UCSD
2
Anna Gloyn, Oxford
Audit category:
42
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
files.file_type!
bedpe bed3+
tsv
organ_slims!
kidney
BIOSAMPLE
ASSAY
528 results
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Clear Filters
ChIP-seq
ATAC-seq
MeRIP-seq
CRISPR genome editing followed by DNA sequencing
STARR-seq
Capture-C
Hi-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
MPRA
WGBS
pCHi-C
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
378
1
2
1
1
1
1
GM12878
60
1
EndoC_BH1
15
18
6
3
2
2
1
Panc1
13
1
1
smooth muscle cell of the coronary artery
6
8
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