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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
41
ChIP-seq
6
ATAC-seq
6
WGBS
2
DNase-seq
1
RNA microarray
1
total RNA-seq
Assay category
41
DNA binding
8
DNA accessibility
6
DNA methylation
1
Transcription
Target of assay
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
25
August, 2017
23
October, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
441
bam
423
bigWig
tsv
43
fastq
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
bedpe bed3+
1
tagAlign
Organism
56
Homo sapiens
Biosample type
57
tissue
Organ
513
liver
371
pancreas
300
kidney
270
epithelium
127
connective tissue
125
heart
101
bone element
95
vasculature
90
blood vessel
73
brain
68
blood
68
bodily fluid
66
limb
63
artery
57
adipose tissue
53
eye
52
musculature of body
19
lung
18
spleen
18
ureter
16
skeleton
14
nerve
11
embryo
6
vein
1
bone marrow
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
57
AMP
Genome assembly (visualization)
26
hg19
25
GRCh38
Lab
57
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bedpe bed3+
tsv
target.investigated_as!
histone
BIOSAMPLE
ASSAY
57 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
RNA microarray
total RNA-seq
tissue
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
1
white adipose tissue
12
adipose tissue
1
3
3
1
subcutaneous abdominal adipose tissue
5
3
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