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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
53
ChIP-seq
5
total RNA-seq
1
DNase-seq
Assay category
53
DNA binding
5
Transcription
1
DNA accessibility
Target of assay
25
histone
25
histone modification
22
transcription factor
12
broad histone mark
12
narrow histone mark
6
control
4
RNA binding protein
2
chromatin remodeller
Date released
54
August, 2017
4
February, 2021
1
May, 2021
Available data
59
bam
57
bigWig
55
fastq
45
bed narrowPeak
14
tagAlign
13
bed bed3+
5
bed bed3
5
tsv
4
bed bedgraph
3
bigBed narrowPeak
1
bed broadPeak
bedpe bed3+
1
bigBed broadPeak
Organism
59
Homo sapiens
Biosample type
498
tissue
59
in vitro differentiated cells
36
primary cell
Organ
59
connective tissue
28
embryo
24
epithelium
15
liver
3
pancreas
1
heart
Project
59
AMP
Genome assembly (visualization)
54
GRCh38
54
hg19
Lab
59
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
total RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
53
4
1
cardiac fibroblast
1
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