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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
379
ChIP-seq
10
total RNA-seq
2
ATAC-seq
2
DNase-seq
2
Hi-C
2
pCHi-C
1
RRBS
1
WGBS
Assay category
379
DNA binding
10
Transcription
4
DNA accessibility
2
3D chromatin structure
2
DNA methylation
Target of assay
288
transcription factor
82
recombinant protein
58
control
55
RNA binding protein
30
histone
30
histone modification
21
chromatin remodeller
16
broad histone mark
14
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
46
November, 2018
15
December, 2017
5
December, 2019
5
January, 2019
4
August, 2021
2
February, 2021
2
July, 2019
2
June, 2019
1
December, 2018
1
May, 2020
1
October, 2019
Available data
393
bam
382
fastq
343
bigWig
314
bed narrowPeak
309
bigBed narrowPeak
60
bed broadPeak
60
bigBed broadPeak
16
tagAlign
11
tsv
7
bed bed3+
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
hdf5
Organism
399
Homo sapiens
Biosample type
370
cell line
tissue
15
in vitro differentiated cells
14
primary cell
Organ
504
epithelium
437
pancreas
399
liver
136
connective tissue
102
vasculature
96
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
53
kidney
37
embryo
21
brain
21
vein
14
musculature of body
5
eye
2
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
399
AMP
Genome assembly (visualization)
342
hg19
293
GRCh38
Lab
399
AMP-T2D consortium
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bedpe bed3+
lab.title!
Bing Ren, UCSD
biosample_type!
tissue
BIOSAMPLE
ASSAY
399 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
RRBS
WGBS
cell line
HepG2
360
5
1
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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