Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
23
ChIP-seq
5
ATAC-seq
3
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
23
DNA binding
5
DNA accessibility
Target of assay
18
control
5
RNA binding protein
5
transcription factor
Date released
386
February, 2021
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
425
bam
408
bigWig
401
tsv
26
fastq
10
bed narrowPeak
8
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
bigBed broadPeak
bedpe bed3+
Organism
430
Homo sapiens
Biosample type
429
tissue
2
primary cell
Organ
744
pancreas
672
liver
550
connective tissue
468
epithelium
431
adipose tissue
360
heart
276
kidney
248
brain
217
vasculature
215
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
57
eye
41
nerve
37
embryo
35
musculature of body
24
spleen
20
lung
17
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
431
AMP
Genome assembly (visualization)
409
hg19
406
GRCh38
Lab
431
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bedpe bed3+
bigBed broadPeak
month_released!
August, 2017
BIOSAMPLE
ASSAY
431 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
3
1
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
1
visceral abdominal adipose tissue
3
adipose tissue(adipose white tissue)
1
primary cell
mesenchymal stem cell of adipose
1
1
Download