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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
ChIP-seq
180
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
3
pCHi-C
3
small RNA-seq
2
Hi-C
2
RRBS
1
single cell RNA-seq
Assay category
203
DNA binding
184
Transcription
29
DNA accessibility
7
DNA methylation
2
3D chromatin structure
Target of assay
transcription factor
103
control
97
histone modification
96
histone
82
recombinant protein
57
RNA binding protein
56
narrow histone mark
40
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
194
May, 2020
74
November, 2017
50
August, 2017
40
May, 2022
30
December, 2017
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
November, 2018
3
February, 2021
2
June, 2019
2
March, 2020
1
December, 2018
1
February, 2020
Available data
351
bam
283
bigWig
165
tsv
138
fastq
106
bed narrowPeak
82
tagAlign
44
bigBed narrowPeak
19
bed broadPeak
19
bigBed broadPeak
8
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
428
Homo sapiens
Biosample type
321
tissue
84
cell line
13
in vitro differentiated cells
10
primary cell
Organ
917
pancreas
638
connective tissue
504
epithelium
472
adipose tissue
428
liver
283
brain
281
heart
219
vasculature
214
blood vessel
214
kidney
159
bone element
134
artery
122
limb
94
musculature of body
60
eye
43
nerve
26
embryo
21
vein
20
lung
19
spleen
18
blood
18
bodily fluid
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
428
AMP
Genome assembly (visualization)
288
hg19
242
GRCh38
Lab
388
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
Audit category:
12
inconsistent control read length
files.file_type!
bedpe bed3+
month_released!
August, 2021
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
428 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
tissue
liver
108
167
20
2
3
1
1
1
1
right lobe of liver
8
3
1
2
1
2
cell line
HepG2
74
5
1
1
2
1
in vitro differentiated cells
hepatocyte
13
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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