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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1777
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
54
pCHi-C
21
RRBS
18
small RNA-seq
14
Hi-C
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
75
DNA methylation
14
3D chromatin structure
Date released
41
May, 2022
20
July, 2019
9
August, 2017
7
November, 2018
6
February, 2021
2
October, 2019
1
August, 2021
1
December, 2018
1
March, 2019
1
March, 2023
Available data
41
zippedFastqFolder
23
hic
22
bigWig
bedpe bed3+
18
bam
18
fastq
17
bed bedMethyl
17
bigBed bedMethyl
6
tsv
5
bed bed3+
5
hdf5
3
cool
1
bedpe
Organism
89
Homo sapiens
Biosample type
53
primary cell
33
tissue
3
cell line
Organ
53
pancreas
50
epithelium
8
heart
7
connective tissue
7
liver
6
adipose tissue
5
blood vessel
5
limb
5
musculature of body
5
vasculature
3
brain
2
spleen
1
kidney
1
vein
Project
47
HPAP
41
AMP
1
ITG
Genome assembly (visualization)
19
GRCh38
8
hg19
Lab
47
Klaus Kaestner, Upenn
39
AMP-T2D consortium
1
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
1
audit script error
Audit category:
1
inconsistent assembly
files.file_type!
bedpe bed3+
month_released!
December, 2017
BIOSAMPLE
ASSAY
89 results
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WGBS
Hi-C
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 3 more…
tissue
gastrocnemius medialis
4
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
+ See 11 more…
cell line
HepG2
1
1
Panc1
1
See all biosamples
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