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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
10
ATAC-seq
3
ChIP-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
91
Transcription
10
DNA accessibility
3
DNA binding
Target of assay
3
transcription factor
Date released
68
May, 2021
18
February, 2021
5
February, 2023
5
November, 2019
December, 2017
4
October, 2019
3
March, 2020
2
December, 2019
Available data
97
bam
91
bigWig
90
tsv
11
bed narrowPeak
bedpe bed3+
4
hic
3
tagAlign
2
bed bed3+
2
ibed
1
bed bedgraph
1
txt
Organism
105
Homo sapiens
Biosample type
105
in vitro differentiated cells
91
cell line
91
tissue
54
primary cell
1
stem cell
Organ
4
connective tissue
2
embryo
1
epithelium
Project
105
AMP
Genome assembly (visualization)
100
hg19
97
GRCh38
Lab
104
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Audit category:
105
inconsistent ontology term
2
audit script error
files.file_type!
bedpe bed3+
month_released!
December, 2017
BIOSAMPLE
ASSAY
105 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
in vitro differentiated cells
cardiomyocytes
59
3
cardiac precursors (cardiac muscle cell)
19
1
cardiomyocytes (cardiac muscle cell)
3
1
2
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
immature adipocyte
2
2
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