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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
512
ChIP-seq
5
total RNA-seq
3
DNase-seq
2
WGBS
1
ATAC-seq
1
Hi-C
1
RRBS
Assay category
512
DNA binding
5
Transcription
4
DNA accessibility
3
DNA methylation
1
3D chromatin structure
Target of assay
378
transcription factor
83
control
82
recombinant protein
67
RNA binding protein
46
histone modification
45
histone
33
chromatin remodeller
25
broad histone mark
20
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
68
November, 2018
63
December, 2017
28
August, 2017
28
December, 2018
23
January, 2019
Available data
741
bam
677
bigWig
525
fastq
495
bed narrowPeak
412
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
525
Homo sapiens
Biosample type
427
cell line
83
tissue
15
in vitro differentiated cells
Organ
471
pancreas
465
liver
257
epithelium
100
connective tissue
60
blood
60
bodily fluid
43
adipose tissue
27
embryo
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
525
AMP
Genome assembly (visualization)
444
hg19
397
GRCh38
Lab
525
AMP-T2D consortium
Audit category:
28
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
525 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
WGBS
ATAC-seq
Hi-C
RRBS
cell line
HepG2
360
5
1
1
GM12878
60
tissue
liver
67
2
1
1
right lobe of liver
10
1
1
in vitro differentiated cells
hepatocyte
15
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