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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
68
total RNA-seq
39
ChIP-seq
13
ATAC-seq
5
RRBS
4
Hi-C
2
pCHi-C
2
small RNA-seq
1
WGBS
1
single cell RNA-seq
Assay category
71
Transcription
39
DNA binding
13
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
150
February, 2021
26
August, 2017
10
July, 2019
10
June, 2019
8
February, 2023
7
May, 2019
3
March, 2020
2
February, 2020
1
January, 2018
1
May, 2021
1
May, 2022
Available data
126
bigWig
123
bam
89
txt
68
bed narrowPeak
67
tsv
47
bigBed narrowPeak
46
bed broadPeak
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bed3
4
bed bedMethyl
4
bigBed bedMethyl
bedpe bed3+
2
fastq
2
hic
Organism
219
Homo sapiens
Biosample type
205
tissue
14
primary cell
Organ
910
pancreas
776
liver
656
connective tissue
498
epithelium
484
adipose tissue
360
heart
276
kidney
251
brain
221
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
60
musculature of body
57
eye
41
nerve
34
embryo
24
spleen
20
lung
19
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
218
AMP
1
T1D
Genome assembly (visualization)
107
hg19
86
GRCh38
Lab
218
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
92
inconsistent ontology term
files.file_type!
bedpe bed3+
bed bed3+
BIOSAMPLE
ASSAY
219 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
RRBS
Hi-C
pCHi-C
small RNA-seq
WGBS
single cell RNA-seq
tissue
bone element
84
bone tissue
58
skeletal muscle tissue
1
22
1
4
1
1
muscle of leg
7
1
gastrocnemius medialis
1
4
+ See 14 more…
primary cell
skeletal muscle satellite cell
1
8
1
skeletal muscle cell
2
1
megakaryocyte
1
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