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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
152
ATAC-seq
74
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
Hi-C
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
479
Transcription
DNA binding
173
DNA accessibility
53
DNA methylation
2
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
157
July, 2018
104
May, 2022
94
August, 2017
57
May, 2021
56
February, 2023
40
November, 2019
40
September, 2018
39
April, 2018
32
February, 2021
19
September, 2020
10
March, 2020
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
5
October, 2019
5
September, 2017
4
June, 2019
3
August, 2018
3
August, 2021
2
October, 2018
1
August, 2022
1
February, 2020
1
June, 2018
Available data
491
bam
462
bigWig
417
tsv
324
fastq
80
zippedFastqFolder
74
bed narrowPeak
32
bigBed narrowPeak
9
bed broadPeak
8
bed bed3+
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
720
Homo sapiens
Biosample type
385
tissue
273
primary cell
63
cell line
Organ
721
pancreas
530
connective tissue
417
adipose tissue
390
epithelium
302
kidney
256
heart
237
liver
159
bone element
132
vasculature
129
blood vessel
107
artery
68
brain
56
eye
56
limb
55
musculature of body
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
4
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
542
AMP
149
HPAP
30
T1D
Genome assembly (visualization)
489
hg19
478
GRCh38
Lab
504
AMP-T2D consortium
149
Klaus Kaestner, Upenn
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
65
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
files.file_type!
bedpe bed3+
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
721 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
MeRIP-seq
DNase-seq
Capture-C
FAIRE-seq
Hi-C
RRBS
small RNA-seq
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
tissue
islet of Langerhans
284
58
7
4
1
1
1
1
body of pancreas
3
4
2
4
2
pancreas
2
2
4
2
1
1
1
primary cell
pancreatic alpha cell
52
35
12
31
pancreatic beta cell
21
23
12
16
pancreatic acinar cell
4
9
12
pancreatic ductal cell
4
4
10
pancreatic delta cell
11
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cell line
EndoC_BH1
33
19
6
2
1
Panc1
1
1
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