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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
14
total RNA-seq
2
DNase-seq
1
FAIRE-seq
1
GRO-seq
1
Hi-C
Assay category
39
DNA binding
14
Transcription
3
DNA accessibility
1
3D chromatin structure
Target of assay
27
histone
27
histone modification
14
narrow histone mark
13
broad histone mark
9
control
3
transcription factor
Date released
21
October, 2019
13
December, 2017
13
February, 2018
8
August, 2021
2
May, 2021
1
January, 2018
Available data
56
bam
44
bigWig
27
bed narrowPeak
27
fastq
14
tsv
13
bigBed narrowPeak
5
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
hic
bedpe bed3+
1
tar
Organism
58
Homo sapiens
Biosample type
29
in vitro differentiated cells
21
primary cell
8
cell line
Organ
939
pancreas
789
liver
683
connective tissue
519
epithelium
490
adipose tissue
354
kidney
350
heart
286
brain
234
vasculature
228
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
58
AMP
Genome assembly (visualization)
45
hg19
41
GRCh38
1
hg18
Lab
58
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
58 results
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ChIP-seq
total RNA-seq
DNase-seq
FAIRE-seq
GRO-seq
Hi-C
in vitro differentiated cells
pancreatic endoderm
18
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
endothelial cell of umbilical vein
17
2
1
1
cell line
H1-hESC
8
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