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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
33
DNase-seq
6
total RNA-seq
5
RRBS
4
Hi-C
2
small RNA-seq
1
ATAC-seq
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
35
DNA accessibility
33
DNA binding
9
Transcription
5
DNA methylation
4
3D chromatin structure
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
control
Date released
41
June, 2019
23
August, 2017
9
July, 2019
6
May, 2019
3
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
67
bigWig
60
bed narrowPeak
53
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
13
tagAlign
9
tsv
3
bed bedMethyl
3
bigBed bedMethyl
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
87
Homo sapiens
Biosample type
75
tissue
12
primary cell
Organ
835
pancreas
676
liver
642
connective tissue
460
adipose tissue
442
epithelium
362
heart
342
kidney
255
brain
210
vasculature
205
blood vessel
159
bone element
132
artery
104
limb
87
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
19
vein
18
ureter
16
skeleton
15
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
87
AMP
Genome assembly (visualization)
71
hg19
52
GRCh38
Lab
87
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
files.file_type!
bedpe bed3+
target.investigated_as!
control
assay_title!
WGBS
BIOSAMPLE
ASSAY
87 results
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ChIP-seq
DNase-seq
total RNA-seq
RRBS
Hi-C
small RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
19
1
4
1
1
1
1
muscle of leg
6
13
muscle of arm
17
gastrocnemius medialis
1
4
psoas muscle
2
1
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primary cell
skeletal muscle satellite cell
7
1
1
skeletal muscle cell
1
1
1
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