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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
87
ChIP-seq
33
DNase-seq
9
snATAC-seq
6
total RNA-seq
5
RRBS
4
Hi-C
2
ATAC-seq
2
small RNA-seq
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
87
DNA binding
44
DNA accessibility
9
Transcription
5
DNA methylation
4
3D chromatin structure
Target of assay
51
transcription factor
34
histone
34
histone modification
20
broad histone mark
14
narrow histone mark
control
10
RNA binding protein
10
chromatin remodeller
Date released
41
June, 2019
27
December, 2018
23
August, 2017
15
January, 2019
12
November, 2018
9
July, 2019
8
January, 2021
6
May, 2019
3
March, 2020
2
February, 2020
2
January, 2018
2
May, 2022
Available data
122
bigWig
114
bed narrowPeak
107
bam
101
bigBed narrowPeak
56
fastq
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
13
tagAlign
9
tsv
3
bed bedMethyl
3
bigBed bedMethyl
bedpe bed3+
2
hic
1
txt
Organism
150
Homo sapiens
Biosample type
75
tissue
55
cell line
20
primary cell
Organ
835
pancreas
676
liver
642
connective tissue
460
adipose tissue
442
epithelium
362
heart
342
kidney
255
brain
210
vasculature
205
blood vessel
159
bone element
132
artery
104
limb
87
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
19
vein
18
ureter
16
skeleton
15
spleen
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
142
AMP
8
T1D
Genome assembly (visualization)
126
hg19
106
GRCh38
Lab
142
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
1
audit script error
1
inconsistent control
files.file_type!
bedpe bed3+
target.investigated_as!
control
assay_title!
WGBS
BIOSAMPLE
ASSAY
150 results
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ChIP-seq
DNase-seq
snATAC-seq
total RNA-seq
RRBS
Hi-C
ATAC-seq
small RNA-seq
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
19
1
1
4
1
1
1
muscle of leg
6
13
muscle of arm
17
gastrocnemius medialis
1
4
psoas muscle
2
1
+ See 3 more…
cell line
GM12878
54
1
primary cell
skeletal muscle satellite cell
7
1
1
peripheral blood mononuclear cell
8
skeletal muscle cell
1
1
1
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