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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
722
ChIP-seq
260
ATAC-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
FAIRE-seq
3
snDrop-seq
2
DNase-seq
2
MeRIP-seq
Assay category
1227
Transcription
722
DNA binding
290
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
254
August, 2017
229
August, 2021
211
October, 2019
170
May, 2020
120
July, 2018
95
February, 2023
93
May, 2019
75
July, 2019
70
November, 2017
66
April, 2019
66
May, 2022
47
September, 2023
45
October, 2018
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
36
December, 2017
25
February, 2020
20
October, 2017
19
April, 2020
15
May, 2023
13
November, 2018
8
January, 2021
6
April, 2018
6
January, 2019
5
March, 2019
3
December, 2018
3
December, 2019
2
January, 2018
2
November, 2020
1
August, 2022
Available data
1768
bigWig
1736
bam
1076
tsv
980
bed narrowPeak
557
bigBed narrowPeak
308
fastq
213
bed broadPeak
202
bed bed3+
186
tagAlign
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2402
Homo sapiens
Biosample type
2410
tissue
1003
primary cell
520
cell line
356
in vitro differentiated cells
9
stem cell
Organ
521
connective tissue
468
pancreas
462
adipose tissue
312
liver
270
heart
224
kidney
212
brain
158
bone element
112
blood vessel
112
vasculature
69
limb
62
artery
53
eye
46
musculature of body
30
nerve
20
lung
16
skeleton
16
spleen
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2313
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1680
GRCh38
1588
hg19
Lab
2060
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
bigBed broadPeak
assay_title!
FAIRE-seq
target.investigated_as!
control
BIOSAMPLE
ASSAY
2410 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
snDrop-seq
DNase-seq
MeRIP-seq
tissue
islet of Langerhans
298
58
68
7
4
3
1
1
2
adipose tissue
382
1
3
3
1
liver
167
102
20
1
3
1
1
1
1
kidney
49
21
75
64
6
1
1
bone element
84
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