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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
258
ChIP-seq
247
total RNA-seq
161
ATAC-seq
154
single cell RNA-seq
35
snATAC-seq
17
pCHi-C
10
Hi-C
RRBS
6
WGBS
3
DNase-seq
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
403
Transcription
258
DNA binding
200
DNA accessibility
10
3D chromatin structure
7
DNA methylation
Target of assay
221
histone
221
histone modification
114
broad histone mark
107
narrow histone mark
35
control
5
RNA binding protein
5
transcription factor
Date released
206
May, 2021
147
May, 2020
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
48
February, 2021
48
July, 2018
44
August, 2017
43
April, 2018
31
June, 2019
30
October, 2019
22
July, 2019
8
January, 2021
7
August, 2020
5
December, 2019
5
May, 2019
5
November, 2020
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
November, 2017
3
October, 2022
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
613
bigWig
609
bam
408
fastq
295
bed narrowPeak
270
tsv
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
bigBed broadPeak
37
bed bed3+
19
zippedFastqFolder
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
895
Homo sapiens
Biosample type
2484
tissue
895
primary cell
603
cell line
393
in vitro differentiated cells
10
stem cell
Organ
298
epithelium
266
pancreas
32
connective tissue
24
vasculature
23
blood vessel
23
kidney
18
vein
12
musculature of body
11
liver
9
brain
9
heart
8
blood
8
bodily fluid
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
500
AMP
204
T1D
190
HPAP
1
ITG
Genome assembly (visualization)
576
hg19
491
GRCh38
Lab
465
AMP-T2D consortium
239
Kyle Gaulton, UCSD
190
Klaus Kaestner, Upenn
1
ITG
Audit category:
49
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
files.file_type!
bigBed broadPeak
assay_title!
RRBS
month_released!
May, 2022
BIOSAMPLE
ASSAY
895 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
Hi-C
WGBS
DNase-seq
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
52
13
12
1
6
Langerhans cell
52
27
pancreatic beta cell
13
21
10
12
1
CD8-positive, alpha-beta T cell
33
4
2
1
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