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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
126
ChIP-seq
84
RNA microarray
69
total RNA-seq
15
ATAC-seq
8
snATAC-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
126
DNA binding
69
Transcription
23
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
51
transcription factor
50
histone
50
histone modification
34
broad histone mark
23
control
16
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
150
February, 2021
65
October, 2019
27
December, 2018
18
January, 2019
15
November, 2018
8
February, 2023
8
January, 2021
7
May, 2019
5
July, 2019
3
February, 2020
1
January, 2018
1
May, 2021
Available data
234
bam
204
bigWig
148
bed narrowPeak
138
bigBed narrowPeak
88
txt
65
tsv
60
fastq
36
bed bed3+
36
bed broadPeak
bigBed broadPeak
4
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
308
Homo sapiens
Biosample type
238
tissue
61
cell line
9
primary cell
Organ
937
pancreas
726
liver
674
connective tissue
496
epithelium
489
adipose tissue
361
heart
272
kidney
246
brain
218
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
58
musculature of body
56
eye
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
299
AMP
9
T1D
Genome assembly (visualization)
179
hg19
174
GRCh38
Lab
299
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
inconsistent control
files.file_type!
bigBed broadPeak
assay_title!
RRBS
BIOSAMPLE
ASSAY
308 results
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ChIP-seq
RNA microarray
total RNA-seq
ATAC-seq
snATAC-seq
Hi-C
WGBS
pCHi-C
tissue
bone element
84
bone tissue
58
tibial nerve
35
5
1
tibial artery
23
1
1
muscle of leg
7
1
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cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
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