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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1752
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
6
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
21
DNA methylation
6
DNA accessibility
Date released
15
July, 2019
9
August, 2017
3
October, 2019
Available data
209
bam
209
bed narrowPeak
209
bigBed narrowPeak
209
bigWig
206
bed broadPeak
bigBed broadPeak
204
bed bed3+
19
bed bedMethyl
19
bigBed bedMethyl
16
fastq
Organism
27
Homo sapiens
Biosample type
13
primary cell
13
tissue
1
cell line
Organ
9
epithelium
7
kidney
5
musculature of body
3
liver
3
pancreas
2
brain
2
heart
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
27
AMP
Genome assembly (visualization)
22
hg19
2
GRCh38
Lab
27
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
27 results
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Clear Filters
RRBS
DNase-seq
primary cell
skeletal muscle myoblast
1
1
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
+ See 7 more…
tissue
skeletal muscle tissue
4
islet of Langerhans
1
1
brain
1
heart left ventricle
1
kidney
1
+ See 4 more…
cell line
glomerular visceral epithelial cell
1
See all biosamples
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