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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
523
total RNA-seq
84
RNA microarray
27
snATAC-seq
18
ATAC-seq
18
single cell RNA-seq
8
ChIP-seq
6
WGBS
3
snDrop-seq
pCHi-C
Assay category
541
Transcription
45
DNA accessibility
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
687
February, 2021
342
November, 2017
340
May, 2020
329
August, 2017
293
October, 2019
277
August, 2021
250
May, 2021
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
80
April, 2019
79
November, 2018
76
October, 2018
73
September, 2018
59
September, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
31
June, 2019
30
January, 2019
28
March, 2020
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
549
bam
537
tsv
529
bigWig
89
txt
45
fastq
23
bed narrowPeak
8
tagAlign
6
csv
2
bed bed3
Organism
687
Homo sapiens
Biosample type
545
tissue
95
cell line
47
primary cell
in vitro differentiated cells
Organ
446
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
32
epithelium
32
pancreas
8
kidney
8
skeleton
6
limb
2
liver
Project
642
AMP
45
HPAP
Genome assembly (visualization)
546
GRCh38
546
hg19
Lab
642
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
110
inconsistent ontology term
32
audit script error
1
inconsistent replicate
files.file_type!
bigBed broadPeak
biosample_type!
in vitro differentiated cells
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
687 results
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Clear Filters
total RNA-seq
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
snDrop-seq
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 13 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
iPSC derived cell line
2
HepG2
1
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
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