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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1554
ChIP-seq
1397
total RNA-seq
489
ATAC-seq
361
single cell RNA-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
52
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
6
DNase-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
6
DNA accessibility
Date released
3
August, 2017
3
October, 2019
1
January, 2018
Available data
209
bigWig
208
bam
208
bed narrowPeak
208
bigBed narrowPeak
205
bed broadPeak
bigBed broadPeak
204
bed bed3+
12
fastq
Organism
7
Homo sapiens
Biosample type
in vitro differentiated cells
3
primary cell
2
tissue
1
cell line
1
stem cell
Organ
3
epithelium
3
kidney
1
liver
1
pancreas
Project
7
AMP
Genome assembly (visualization)
3
hg19
2
GRCh38
1
hg18
Lab
7
AMP-T2D consortium
files.file_type!
bigBed broadPeak
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
7 results
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DNase-seq
GRO-seq
primary cell
kidney glomerular epithelial cell
1
kidney tubule cell
1
skeletal muscle myoblast
1
tissue
islet of Langerhans
1
right lobe of liver
1
cell line
glomerular visceral epithelial cell
1
stem cell
hESC
1
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